Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
SARC rs12203934 chr6:133182843 A/T 2.7E-6 252 32.45 26.07 14.95 KM Plot
SARC rs12209781 chr6:133178712 G/T 2.7E-6 252 32.45 26.07 14.95 KM Plot
SARC rs12212934 chr6:133185588 C/T 1.09E-5 258 33.18 26.82 15.57 KM Plot
SARC rs12281481 chr11:71214904 T/C 1.81E-5 256 8.62 26.25 33.48 KM Plot
SARC rs12284003 chr11:28125929 A/G 9.65E-7 258 7.1 27.7 32.3 KM Plot
SARC rs12353399 chr9:4635448 C/T 4.56E-7 258 34.42 20 6.37 KM Plot
SARC rs12432582 chr14:77911138 G/T 0 252 31.57 39.08 0.73 KM Plot
SARC rs12464553 chr2:70196124 T/A 3.59E-5 254 33.08 31.27 18.33 KM Plot
SARC rs12486879 chr3:159805043 T/C 2.03E-12 258 32.13 30.73 3.1 KM Plot
SARC rs12489962 chr3:159812421 G/A 1.6E-12 258 32.3 30.3 3.1 KM Plot
SARC rs12504721 chr4:107178254 C/T 2.68E-5 258 10.67 36.93 32.88 KM Plot
SARC rs12510574 chr4:42042876 G/A 3.49E-5 258 33.95 31.42 13.43 KM Plot
SARC rs12576563 chr11:121487346 A/G 3.51E-10 258 4.88 33.55 30.33 KM Plot
SARC rs12591175 chr15:75356073 C/T 1.79E-5 251 33.2 30.3 8.87 KM Plot
SARC rs12666682 chr7:134021784 C/A 6.54E-5 247 30.75 31.77 24.6 KM Plot